Publications 2003
2008 — 2007 — 2006 — 2005 — 2004 — 2003
Publications In Press
Recent Posters
Amin, N., Ozier, O., and Ideker, T. Global architecture of genetic interactions on the protein interaction network. Nature Biotechnology 21: 490-491 (2003).
Ge Y, Molloy MP, Chamberlain JS, Andrews PC. Proteomic analysis of mdx skeletal muscle: Great reduction of adenylate kinase 1 expression and enzymatic activity. Proteomics.3:1895-903, 2003.
Giot, L., Bader, J. S. , Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y. L., Ooi, C.E., Godwin, B., Vitols, E., Govindan, V., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A. Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsk, Y., DaSilva, A., Zhong, J., Stanyon, C.A., Finley, Jr., R.L., White, K.P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R.A, McKenna, M.P., Rothberg, J.M., Chant J. A. A Genome-Scale Protein Interaction Map of Drosophila melanogaster. Science, 203, 1727-1736, 2003.
Ikonomov, O.C., Sbrissa, D., Mlakm K., Deeb, R., Fligger, J., Soans, A., Finley, Jr., R.L., and Shisheva, A. Active PILfyve associates with and promotes the membrane attachment of the late endosome-to-TGN transport factor Rab9 effector p40. J. Biol. Chem., 278, 50863-50871, 2003.
Kelley, B. P., Sharan, R., Karp, R., Sittler, E. T., Root, D. E., Stockwell, B. R., and Ideker, T. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc Natl Acad Sci U S A 100, 11394-9 (2003).
Michailidis, G. and Shedden, K. (2003), The Application of Rule-Based Methods to Class Prediction Problems in Genomics, Journal of Computational Biology, 10, 689-698.
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, D., Schwikowski, B., and Ideker, T. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-504 (2003).
Stanyon, C.A., Limjindaporn, T., and Finley, Jr., R.L. Simultaneous transfer of open reading frames into several different expression vectors. Biotechniques, 35, 520-536, 2003.
Young ET, Dombek KM, Tachibana C, Ideker T. Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8. J Biol. Chem., 278(28): 26146-58 (2003).
Zhong, J., Zhang, H., Stanyon, C.A., Tromp, G., and Finley, Jr., R.L. A strategy for constructing large protein interaction maps using the yeast two-hybrid system: regulated expression arrays and two-phase mating. Genome Research, 13, 2691-2699, 2003.